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[Discover] 分析弹性性能出错

本主题由 minminchen8 于 2008-9-9 08:31 提升

分析弹性性能出错

做Elacstic模拟时出现这样的警告:Error: Miscellaneous: Error encountered in routine analysis_main:
之后我把限制条件去了,运算成功了...可是在输出文件中出现:DISCOVER Molecular Simulation Program
  Version:   2005.2
  Build:     Dec 19 2005
  Date:      Mon Sep 08 22:07:40 2008
  Host Name: hqs-4916e1b4a5f
  Host Type: Windows
  Threads:   2

---------------------------------------------------------------
Checked out license feature: MS_discover <v2005.11> [for 9999:9999:99:LND] (2 copies)
---------------------------------------------------------------
randomSeed is set to 882860
Line   7:BTCL> autoEcho off
---------------------------------------------------------------
Checked out license feature: MS_compass <v2005.11> [for 9999:9999:99:LND] (1 copy)
---------------------------------------------------------------
INPUT FILES
___________
File Type  Name
---------  ----
Forcefield  C:\PROGRA~1\Accelrys\MSMODE~1.0\Discover\..\Data\Discover\res/compass.frc
Molecular data  Al2O3__0_0_1_.mdf
Coordinate  Al2O3__0_0_1_.car
Periodic Boundary Conditions
____________________________
  Length (A)  Angle (degrees)
  ----------  ---------------
  a 14.27700  alpha  90.00000
  b 14.27700  beta   90.00000
  c 18.66070  gamma  60.00000

MOLECULAR TOPOLOGY
__________________
Number of molecules:       1
Number of residues:       1
Number of atoms:     189 (asymmetric unit: 189)
Number of atom types:       3
FORCEFIELD OPTIONS
__________________
Filename    : compass.frc
Definition name    : cff91
Version     : 2.6
Last modification date   : 10/1/2001
# of automatic parameters : 0
Warning: Energy:   The simulation box is not neutral.
Warning: Energy:   The simulation box is not neutral.
Applying homogenous background charge density correction for Ewald
NONBOND ENERGY CUTOFFS
______________________
  Cutoff (A) Spline Width (A) Buffer Width (A)
vdW    9.50       1.00       0.50
Coulomb     --         --         --
NONBOND ENERGY EWALD PARAMETERS
_______________________________
  Accuracy (kcal/mol) Update Width (A)
vdW     --                 --
Coulomb    0.01000000       1.00
Summation method for vdW : Atom based
Summation method for Coulomb : Ewald
Dielectric   : 1.00
NOTE: Pressure and energy tail corrections will be added to all subsequent energy evaluations
Warning: Energy:   The simulation box is not neutral.
Warning: Energy:   The simulation box is not neutral.
Applying homogenous background charge density correction for Ewald
Warning: Energy:   The simulation box is not neutral.
Warning: Energy:   The simulation box is not neutral.
Applying homogenous background charge density correction for Ewald
Total time used by DISCOVER: 6.59 secs
Completion date: Mon Sep 08 22:07:47 2008
Exiting Discover: status OK.
并没有我想要的量...模拟时间很短5PS...
哪位达人说一下分析弹性性能的具体操作,在 此谢过!

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体系的净电荷不为零,要通过charge设定一下,或看你的结构是不是不符合分子式的比例!
还有,请问你是利用什么模块来计算和分析弹性性质的,重复性如何?可不可以计算液体和玻璃态? 谢谢!
本帖最近评分记录
  • minminchen8 讨论指数 +1 Thanks for suggestion 2008-10-2 13:20
Materials Studio, Gaussion, Lammps,Hyperchem

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是在discover模块里做的,个人认为重复性还可以,因为你可以多取几幅分析一下就知道了,至于液体和玻璃态理论上可以,因为只要是凝聚态的都可以分析,但要搞清楚在实际中的意义
本帖最近评分记录
  • tangsw911 讨论指数 +1 Thanks for suggestion 2008-10-5 17:29

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